BibTeX

@article{saric:2002,
  author = {Luca Bernardi and Esther Ratsch and Renate Kania and Jasmin  v {S}ari{c}
	and Isabel Rojas},
  title = {Interdisciplinary Work: The Key to Functional Genomics},
  journal = {IEEE Intelligent Systems},
  year = {2002},
  volume = {17},
  pages = {66-68},
  number = {3},
  address = {New York},
  editor = {Steffen Staab},
  publisher = {IEEE Computer Society}
}

@InProceedings{ciaramita:05,
  author = {Massimiliano Ciaramita and Aldo Gangemi and Esther Ratsch and Jasmin
	 v {S}ari{c} and Isabel Rojas},
  title = {Unsupervised Learning of Semantic Relations between Concepts of a
	Molecular Biology Ontology},
  booktitle = {Proceedings of the 19th International Joint Conference on Artificial
	Intelligence IJCAI},
  year = {2005}
}

@article{ratschetal:2003,
  author = {P. Cimiano and E. Ratsch and U. Reyle and J. Saric and J. Schulz
	and U. Wittig},
  title = {Developping a Protein Interactions Ontology},
  journal = {Comparative and Functional Genomics},
  year = {2003}
}

@article{reyleetal:2004,
  author = {Philipp Cimiano and Uwe Reyle and Jasmin Saric},
  title = {Ontology Driven Discourse Analysis for Information Extraction},
  journal = {Data and Knowledge Engeneering Journal},
  year = {2004}
}

@article{jensen2006,
  author = {L.J. Jensen and J. Saric and P. Bork},
  title = {Literature mining for the biologist: from information retrieval to
	biological discovery},
  journal = {Nature Reviews Genetics},
  year = {2006},
  volume = {7},
  pages = {119-129}
}

@InProceedings{saricreyle01,
  author = {Uwe Reyle and Jasmin Saric},
  title = {Ontology-Driven Information Extraction},
  booktitle = {Proceedings of the ninetenth Twente Workshop on Language Technology,
	TWLT 19},
  year = {2001},
  editor = {Paul van der Vet and Gertjan van Ommen and Anton Nijholt and Alfonso
	Valencia},
  organization = {University of Enschede},
  postscript = {https://www.ims.uni-stuttgart.de/~uwe/Papers/esf.ps}
}

@InProceedings{reylesaric:eccb,
  author = {Uwe Reyle and Jasmin Saric},
  title = {TIGERSearch attacks Proteins},
  booktitle = {Proceedings of the European Conference on Computational Biology (ECCB
	2003) in Conjunction with the French National Conference on Bioinformatics
	(JOBIM 2003)},
  year = {2003},
  editor = {Catherine Christophe, Hans-Peter Lenhof and Marie-France Sagot}
}

@misc{reyleposter2:02,
  author = {Uwe Reyle and Jasmin Saric and Philipp Cimiano Lavin and Heike Zinsmeister},
  title = {Ontology-driven disambiguation of syntactic and semantic ambiguities
	in GenIE},
  howpublished = {European Media Laboratory, Heidelberg},
  month = {November},
  year = {2002},
  note = {Poster at Workshop on Ontology for Biology}
}

@InProceedings{saricreyle02,
  author = {Uwe Reyle and Jasmin  v {S}ari{c}},
  title = {Corpus Driven Information Extraction},
  booktitle = {Proceedings of the EFMI Workshop on Natural Language Processing in
	Biomedical Applications},
  year = {2002},
  editor = {Baud, Robert and Ruch, Patrick},
  address = {Nicosia, Cyprus},
  publisher = {unknown}
}

@article{elsa:joint:02,
  author = {Isabel Rojas and Luca Bernardi and Esther Ratsch and Renate Kania
	and Ulrike Wittig and Jasmin  v {S}ari{c}},
  title = {A database system for the analysis of biochemical pathways},
  journal = {In Silico Biology 2, 0007},
  year = {2002}
}

@article{rojasetal:insilico2003,
  author = {Isabel Rojas and Esther Ratsch and Jasmin  v {S}ari{c} and Ulrike
	Wittig},
  title = {Notes on the use of ontologies in the biochemical domain },
  journal = {In Silico Biology},
  year = {2003},
  volume = {4}
}

@incollection{sar08,
  author = {Saric, Jasmin and Engelken, Henriette and Reyle, Uwe},
  title = {Discovering biomedical knowledge from {L}iterature},
  booktitle = {Functional {P}roteomics ({M}ethods in {M}olecular {B}iology)},
  publisher = {Humana Press},
  year = {2008},
  editor = {Thompson, J. D. and Schaeffer-Reiss, C. and Ueffing, M.}
}

@incollection{reyle/rossdeutscher:2000a,
  author = {Jasmin  v {S}ari{c}},
  title = {Implementierung des Lexikons und der Tempuskonstruktion - Kompositionalit{ä}t
	regelbasiert.},
  booktitle = {Presuppositions and Underspecification in the Computation of Temporal
	and other Relations in Discourse},
  publisher = {Arbeitsberichte des Sonderfoschungsbereichs 340, Stuttgart/T{ü}bingen,
	Nr.164},
  year = {2000},
  editor = {Uwe Reyle}
}

@InProceedings{saric:smbm05,
  author = {Jasmin  v {S}ari{c} and Lars J. Jensen and Rossitza Ouzounova and
	Peer Bork and Isabel Rojas},
  title = {Large-scale Extraction of Protein/Gene Relations for Model Organisms},
  booktitle = {Proceedings of the First International Symposium on Semantic Mining
	in Biomedicine},
  year = {2005}
}

@misc{sar05bioinf,
  author = {Jasmin  v {S}ari{c} and Lars J. Jensen and Rossitza Ouzounova and
	Isabel Rojas and Peer Bork},
  title = {Extraction of regulatory gene/protein networks from {Medline}},
  year = {2005},
  note = {doi:10.1093/bioinformatics/bti597},
  journal = {Bioinformatics}
}

@article{saric:isb04,
  author = {Jasmin  v {S}ari{c} and Lars J. Jensen and Isabel Rojas},
  title = {Large-scale extraction of gene regulation for model organisms in
	an ontological context},
  journal = {In Silico Biol. 5, 0004},
  year = {2004}
}

@InProceedings{saricetal:acl04,
  author = {Jasmin  v {S}ari{c} and Lars Juhl Jensen and Rossitza Ouzounova
	and Isabel Rojas and Peer Bork},
  title = {Extraction of Regulatory Gene Expression Networks from PubMed},
  booktitle = {Proceedings of the ACL 2004 Conference},
  year = {2004},
  pages = {192-199},
  address = {Barcelona, Spain}
}

@InProceedings{saric04nettab,
  author = {Jasmin  v {S}ari{c} and Isabel Rojas and Esther Ratsch and Renate
	Kania and Ulrike Wittig and Aldo Gangemi},
  title = {Modelling gene expression},
  booktitle = {Proceedings of Nettab 2004},
  year = {2004},
  address = {Camerino, Italy}
}