BibTeX
@article{saric:2002,
author = {Luca Bernardi and Esther Ratsch and Renate Kania and Jasmin v {S}ari{c}
and Isabel Rojas},
title = {Interdisciplinary Work: The Key to Functional Genomics},
journal = {IEEE Intelligent Systems},
year = {2002},
volume = {17},
pages = {66-68},
number = {3},
address = {New York},
editor = {Steffen Staab},
publisher = {IEEE Computer Society}
}
@InProceedings{ciaramita:05,
author = {Massimiliano Ciaramita and Aldo Gangemi and Esther Ratsch and Jasmin
v {S}ari{c} and Isabel Rojas},
title = {Unsupervised Learning of Semantic Relations between Concepts of a
Molecular Biology Ontology},
booktitle = {Proceedings of the 19th International Joint Conference on Artificial
Intelligence IJCAI},
year = {2005}
}
@article{ratschetal:2003,
author = {P. Cimiano and E. Ratsch and U. Reyle and J. Saric and J. Schulz
and U. Wittig},
title = {Developping a Protein Interactions Ontology},
journal = {Comparative and Functional Genomics},
year = {2003}
}
@article{reyleetal:2004,
author = {Philipp Cimiano and Uwe Reyle and Jasmin Saric},
title = {Ontology Driven Discourse Analysis for Information Extraction},
journal = {Data and Knowledge Engeneering Journal},
year = {2004}
}
@article{jensen2006,
author = {L.J. Jensen and J. Saric and P. Bork},
title = {Literature mining for the biologist: from information retrieval to
biological discovery},
journal = {Nature Reviews Genetics},
year = {2006},
volume = {7},
pages = {119-129}
}
@InProceedings{saricreyle01,
author = {Uwe Reyle and Jasmin Saric},
title = {Ontology-Driven Information Extraction},
booktitle = {Proceedings of the ninetenth Twente Workshop on Language Technology,
TWLT 19},
year = {2001},
editor = {Paul van der Vet and Gertjan van Ommen and Anton Nijholt and Alfonso
Valencia},
organization = {University of Enschede},
postscript = {https://www.ims.uni-stuttgart.de/~uwe/Papers/esf.ps}
}
@InProceedings{reylesaric:eccb,
author = {Uwe Reyle and Jasmin Saric},
title = {TIGERSearch attacks Proteins},
booktitle = {Proceedings of the European Conference on Computational Biology (ECCB
2003) in Conjunction with the French National Conference on Bioinformatics
(JOBIM 2003)},
year = {2003},
editor = {Catherine Christophe, Hans-Peter Lenhof and Marie-France Sagot}
}
@misc{reyleposter2:02,
author = {Uwe Reyle and Jasmin Saric and Philipp Cimiano Lavin and Heike Zinsmeister},
title = {Ontology-driven disambiguation of syntactic and semantic ambiguities
in GenIE},
howpublished = {European Media Laboratory, Heidelberg},
month = {November},
year = {2002},
note = {Poster at Workshop on Ontology for Biology}
}
@InProceedings{saricreyle02,
author = {Uwe Reyle and Jasmin v {S}ari{c}},
title = {Corpus Driven Information Extraction},
booktitle = {Proceedings of the EFMI Workshop on Natural Language Processing in
Biomedical Applications},
year = {2002},
editor = {Baud, Robert and Ruch, Patrick},
address = {Nicosia, Cyprus},
publisher = {unknown}
}
@article{elsa:joint:02,
author = {Isabel Rojas and Luca Bernardi and Esther Ratsch and Renate Kania
and Ulrike Wittig and Jasmin v {S}ari{c}},
title = {A database system for the analysis of biochemical pathways},
journal = {In Silico Biology 2, 0007},
year = {2002}
}
@article{rojasetal:insilico2003,
author = {Isabel Rojas and Esther Ratsch and Jasmin v {S}ari{c} and Ulrike
Wittig},
title = {Notes on the use of ontologies in the biochemical domain },
journal = {In Silico Biology},
year = {2003},
volume = {4}
}
@incollection{sar08,
author = {Saric, Jasmin and Engelken, Henriette and Reyle, Uwe},
title = {Discovering biomedical knowledge from {L}iterature},
booktitle = {Functional {P}roteomics ({M}ethods in {M}olecular {B}iology)},
publisher = {Humana Press},
year = {2008},
editor = {Thompson, J. D. and Schaeffer-Reiss, C. and Ueffing, M.}
}
@incollection{reyle/rossdeutscher:2000a,
author = {Jasmin v {S}ari{c}},
title = {Implementierung des Lexikons und der Tempuskonstruktion - Kompositionalit{ä}t
regelbasiert.},
booktitle = {Presuppositions and Underspecification in the Computation of Temporal
and other Relations in Discourse},
publisher = {Arbeitsberichte des Sonderfoschungsbereichs 340, Stuttgart/T{ü}bingen,
Nr.164},
year = {2000},
editor = {Uwe Reyle}
}
@InProceedings{saric:smbm05,
author = {Jasmin v {S}ari{c} and Lars J. Jensen and Rossitza Ouzounova and
Peer Bork and Isabel Rojas},
title = {Large-scale Extraction of Protein/Gene Relations for Model Organisms},
booktitle = {Proceedings of the First International Symposium on Semantic Mining
in Biomedicine},
year = {2005}
}
@misc{sar05bioinf,
author = {Jasmin v {S}ari{c} and Lars J. Jensen and Rossitza Ouzounova and
Isabel Rojas and Peer Bork},
title = {Extraction of regulatory gene/protein networks from {Medline}},
year = {2005},
note = {doi:10.1093/bioinformatics/bti597},
journal = {Bioinformatics}
}
@article{saric:isb04,
author = {Jasmin v {S}ari{c} and Lars J. Jensen and Isabel Rojas},
title = {Large-scale extraction of gene regulation for model organisms in
an ontological context},
journal = {In Silico Biol. 5, 0004},
year = {2004}
}
@InProceedings{saricetal:acl04,
author = {Jasmin v {S}ari{c} and Lars Juhl Jensen and Rossitza Ouzounova
and Isabel Rojas and Peer Bork},
title = {Extraction of Regulatory Gene Expression Networks from PubMed},
booktitle = {Proceedings of the ACL 2004 Conference},
year = {2004},
pages = {192-199},
address = {Barcelona, Spain}
}
@InProceedings{saric04nettab,
author = {Jasmin v {S}ari{c} and Isabel Rojas and Esther Ratsch and Renate
Kania and Ulrike Wittig and Aldo Gangemi},
title = {Modelling gene expression},
booktitle = {Proceedings of Nettab 2004},
year = {2004},
address = {Camerino, Italy}
}