Bibliography of Saric, Jasmin

  • 2008
    • Saric, Jasmin; Engelken, Henriette; Reyle, Uwe Discovering biomedical knowledge from Literature in J. D. Thompson; C. Schaeffer-Reiss and M. Ueffing, editors, Functional Proteomics (Methods in Molecular Biology) Humana Press.
  • 2006
    • Jensen, L.J.; Saric, J.; Bork, P. Literature mining for the biologist: from information retrieval to biological discovery Nature Reviews Genetics 7:119-129.
  • 2005
    • Ciaramita, Massimiliano; Gangemi, Aldo; Ratsch, Esther; Saric, Jasmin; Rojas, Isabel Unsupervised Learning of Semantic Relations between Concepts of a Molecular Biology Ontology in Proceedings of the 19th International Joint Conference on Artificial Intelligence IJCAI.
    • Saric, Jasmin; Jensen, Lars J.; Ouzounova, Rossitza; Bork, Peer; Rojas, Isabel Large-scale Extraction of Protein/Gene Relations for Model Organisms in Proceedings of the First International Symposium on Semantic Mining in Biomedicine.
    • Saric, Jasmin; Jensen, Lars J.; Ouzounova, Rossitza; Rojas, Isabel; Bork, Peer Extraction of regulatory gene/protein networks from Medline doi:10.1093/bioinformatics/bti597.
  • 2004
    • Cimiano, Philipp; Reyle, Uwe; Saric, Jasmin Ontology Driven Discourse Analysis for Information Extraction Data and Knowledge Engeneering Journal.
    • Saric, Jasmin; Jensen, Lars J.; Rojas, Isabel Large-scale extraction of gene regulation for model organisms in an ontological context In Silico Biol. 5, 0004.
    • Saric, Jasmin; Jensen, Lars Juhl; Ouzounova, Rossitza; Rojas, Isabel; Bork, Peer Extraction of Regulatory Gene Expression Networks from PubMed in Proceedings of the ACL 2004 Conference pp. 192-199 Barcelona, Spain.
    • Saric, Jasmin; Rojas, Isabel; Ratsch, Esther; Kania, Renate; Wittig, Ulrike; Gangemi, Aldo Modelling gene expression in Proceedings of Nettab 2004 Camerino, Italy.
  • 2003
    • Cimiano, P.; Ratsch, E.; Reyle, U.; Saric, J.; Schulz, J.; Wittig, U. Developping a Protein Interactions Ontology Comparative and Functional Genomics.
    • Reyle, Uwe; Saric, Jasmin TIGERSearch attacks Proteins in Hans-Peter Lenhof Catherine Christophe and Marie-France Sagot, editors, Proceedings of the European Conference on Computational Biology (ECCB 2003) in Conjunction with the French National Conference on Bioinformatics (JOBIM 2003).
    • Rojas, Isabel; Ratsch, Esther; Saric, Jasmin; Wittig, Ulrike Notes on the use of ontologies in the biochemical domain In Silico Biology 4.
  • 2002
    • Bernardi, Luca; Ratsch, Esther; Kania, Renate; Saric, Jasmin; Rojas, Isabel Interdisciplinary Work: The Key to Functional Genomics IEEE Intelligent Systems 17(3):66-68.
    • Reyle, Uwe; Saric, Jasmin; Lavin, Philipp Cimiano; Zinsmeister, Heike Ontology-driven disambiguation of syntactic and semantic ambiguities in GenIE European Media Laboratory, Heidelberg poster at Workshop on Ontology for Biology.
    • Reyle, Uwe; Saric, Jasmin Corpus Driven Information Extraction in Robert Baud and Patrick Ruch, editors, Proceedings of the EFMI Workshop on Natural Language Processing in Biomedical Applications unknown, Nicosia, Cyprus.
    • Rojas, Isabel; Bernardi, Luca; Ratsch, Esther; Kania, Renate; Wittig, Ulrike; Saric, Jasmin A database system for the analysis of biochemical pathways In Silico Biology 2, 0007.
  • 2001
    • Reyle, Uwe; Saric, Jasmin Ontology-Driven Information Extraction in Paul van der Vet; Gertjan van Ommen; Anton Nijholt and Alfonso Valencia, editors, Proceedings of the ninetenth Twente Workshop on Language Technology, TWLT 19 University of Enschede.
  • 2000
    • Saric, Jasmin Implementierung des Lexikons und der Tempuskonstruktion - Kompositionalität regelbasiert. in Uwe Reyle, editor, Presuppositions and Underspecification in the Computation of Temporal and other Relations in Discourse Arbeitsberichte des Sonderfoschungsbereichs 340, Stuttgart/Tübingen, Nr.164.